Scaffold GOS2252_1009551

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold GOS2252_1009551

Scaffold GOS2252_1009551

Overview

Basic Information
Taxon OID	3300001937 Open in IMG/M
Scaffold ID	GOS2252_1009551 Open in IMG/M
Source Dataset Name	Marine microbial communities from the Equatorial Pacific Ocean - GS037
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	J. Craig Venter Institute (JCVI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1471
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location
Location Name	Equatorial Pacific Ocean
Coordinates	Lat. (^o)	-1.9738889	Long. (^o)	-95.014725	Alt. (m)		Depth (m)	1.8
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F087331	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
GOS2252_10095512	F087331	GGA	MTVKENKWTYPEENPYGECTHNGEVEVYYNMTSFLDDSEVHQIWEIVGKAMDRENIVTSGNEQLSVRVYDEITTPEDS*

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