NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold GOS2218_1024577

Scaffold GOS2218_1024577


Overview

Basic Information
Taxon OID3300001947 Open in IMG/M
Scaffold IDGOS2218_1024577 Open in IMG/M
Source Dataset NameMarine microbial communities from the Gulf of Maine, Canada - GS002
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1136
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location
Location NameGulf of Maine, Canada
CoordinatesLat. (o)42.503056Long. (o)-67.24Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004990Metagenome416Y
F008915Metagenome / Metatranscriptome326Y
F079202Metagenome116N

Sequences

Protein IDFamilyRBSSequence
GOS2218_10245772F008915AGGGGGMNNEITLDLYEMQSASHLGILRCLESKKHKENWGYNYKGSLNDQMAKSISGAMGEVAASKFLGIKFEYHCNVGGVPDLIFKDLRLQVRTQIPKNNNSLIIRPKAKQDEFYILVIDEAPKFKILGFVNSTYVLGQEQWKTTFGLDRPFCYSIPPEKLTPINLLKDSTWN*
GOS2218_10245773F004990GGAMYGDPKKKCCACENGADLKEGNKYYCCDHYALYVLGKPMSQIEKELQNGN*
GOS2218_10245775F079202GAGMDKIKYFEKIDKDLINNRALNSHEKLIYVICKSFENAPRGCRISHKYLMQRTG
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