Scaffold GOS2218_1026596

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold GOS2218_1026596

Scaffold GOS2218_1026596

Overview

Basic Information
Taxon OID	3300001947 Open in IMG/M
Scaffold ID	GOS2218_1026596 Open in IMG/M
Source Dataset Name	Marine microbial communities from the Gulf of Maine, Canada - GS002
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	J. Craig Venter Institute (JCVI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1541
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location
Location Name	Gulf of Maine, Canada
Coordinates	Lat. (^o)	42.503056	Long. (^o)	-67.24	Alt. (m)		Depth (m)	1
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F097662	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
GOS2218_10265961	F097662	N/A	RQNLKHVYLAGGEPFYLKNFPTTVQRLGSLAPGARFVINTNGTRLLREKDLKQLKTVENVFLRFSVDGWGAADEWTRQDTVWEEKLQVMDQYYNHFKLKVWDITANSLSVRHIPKLITHLWENYPDAKVQIRPVVNKTEVLMENIPDRLKADSLAFFEQHKDKLEGVDHVINEMRKPFNNDMKRKHTVKHFVNYYDTHGVVTLDSFDPELAEWINSDAEE*

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