NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold GOS2218_1043428

Scaffold GOS2218_1043428


Overview

Basic Information
Taxon OID3300001947 Open in IMG/M
Scaffold IDGOS2218_1043428 Open in IMG/M
Source Dataset NameMarine microbial communities from the Gulf of Maine, Canada - GS002
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2956
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location
Location NameGulf of Maine, Canada
CoordinatesLat. (o)42.503056Long. (o)-67.24Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010944Metagenome / Metatranscriptome297Y
F036928Metagenome / Metatranscriptome169N

Sequences

Protein IDFamilyRBSSequence
GOS2218_10434281F010944N/AINLTAVTASFVIVPITTPVNIATASTSATQTYTADVVISDQMPEQKISDFIGSLVRAFNLVIVPVANNKYDIEPLDDWYAEGTTRDVTEYIDTEEVTIRKPSLYRRISFNYNETEAILGEQFRLQNDIGYGDLRADFTFDGEEFEVEVGFDHMLFERLSDQSGGALTTIGVGKSITREIEPYIGSPLIFYVAGNIRGNESFSYVNMDADHFPFTDFWQVGNVNNDVAADVTKTLNFGTEVDPYLLQGFSQGLYSTYWKDYITDLYDTSRRTFQYSGQLPLGLMLALKINDKLTIGERNYIINQMKLNLSTGETQMELLNDV*
GOS2218_10434282F036928GGAMYSKLGYLIKALKETNKKNEDVRTAKGKYQYPRTLIEALGKWQ*
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