NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold GOS2224_1017111

Scaffold GOS2224_1017111


Overview

Basic Information
Taxon OID3300001952 Open in IMG/M
Scaffold IDGOS2224_1017111 Open in IMG/M
Source Dataset NameMarine microbial communities from Newport Harbor, Rhode Island, USA - GS008
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1460
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location
Location NameNewport Harbor, Rhode Island, USA
CoordinatesLat. (o)41.485832Long. (o)-71.35111Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F068112Metagenome125N

Sequences

Protein IDFamilyRBSSequence
GOS2224_10171111F068112N/AMKKVLAILLISLLWTNISLAKSIKKGSGPLKLDDEAVKFFHIYLTVKMTTTIFEVNNLPGMTYQTPDGKPRYANYFLIQNQKRPYIWVWWNDQAIRAEEAGTFGCENGACKQFANKNRIVWKGAKKKISRKITLDELKVVLKELGFYD*
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