NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold GOS2235_1014861

Scaffold GOS2235_1014861


Overview

Basic Information
Taxon OID3300001954 Open in IMG/M
Scaffold IDGOS2235_1014861 Open in IMG/M
Source Dataset NameMarine microbial communities from Colon, Panama - GS019
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1590
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED41(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location
Location NameColon, Panama
CoordinatesLat. (o)10.716389Long. (o)-80.25445Alt. (m)Depth (m)1.7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F049005Metagenome / Metatranscriptome147N
F097307Metagenome104N

Sequences

Protein IDFamilyRBSSequence
GOS2235_10148611F049005N/ADNPITKLQFGLVYENDNFIPTTGTAGDGSTTTSTKIGFIKDKISEALYGTFTERMQVFNPTSGAGLISNEEITAAPVLLVSQDEIMDAITVTEALDTATMVSGFRPTLASELPTDNADSDTAE*
GOS2235_10148612F097307N/AMLLKVLVNMFMATVTLGNHQTGLNKPTRPSDPNGIAHSVSNITGTDGLRTTTKSERHAFKADWAAFVLDWKTKYIAGDSLPAAYNGTFTSVDGSSSVNVDYADE*
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