Scaffold GOS2235_1045394

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold GOS2235_1045394

Scaffold GOS2235_1045394

Overview

Basic Information
Taxon OID	3300001954 Open in IMG/M
Scaffold ID	GOS2235_1045394 Open in IMG/M
Source Dataset Name	Marine microbial communities from Colon, Panama - GS019
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	J. Craig Venter Institute (JCVI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1463
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location
Location Name	Colon, Panama
Coordinates	Lat. (^o)	10.716389	Long. (^o)	-80.25445	Alt. (m)		Depth (m)	1.7
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F016980	Metagenome	243	Y
F019152	Metagenome	231	N

Sequences

Protein ID	Family	RBS	Sequence
GOS2235_10453942	F016980	AGG	MKYKELLNQLQHLSKEQLELETLVFIRDKEKFVSPISGLYFVTEFDEYEEDLETDQPYFRV*
GOS2235_10453943	F019152	GGAG	MEHTKGILLECNLSEEEINTVIEALSRDYVENDAEILEKEYQLQGKLREIISTFYTKIDAQKFTQIQVQSVKGSTL*

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