NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold GOS2237_1055067

Scaffold GOS2237_1055067


Overview

Basic Information
Taxon OID3300001955 Open in IMG/M
Scaffold IDGOS2237_1055067 Open in IMG/M
Source Dataset NameMarine microbial communities from Gulf of Panama, Panama - GS021
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)923
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location
Location NameGulf of Panama, Panama
CoordinatesLat. (o)8.129167Long. (o)-79.69111Alt. (m)Depth (m)1.6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F068256Metagenome125Y

Sequences

Protein IDFamilyRBSSequence
GOS2237_10550672F068256GAGMVPMYREPHLQRKSDQCAYLWKNWYNYKYGLKDEEKAKEYRELWGKCIEEHTKMCDKEIKTNLRYTRMESLNKKIKK*ITSNYSLDLLCKPLGA*
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