Scaffold GOS2266_1005963

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold GOS2266_1005963

Scaffold GOS2266_1005963

Overview

Basic Information
Taxon OID	3300001956 Open in IMG/M
Scaffold ID	GOS2266_1005963 Open in IMG/M
Source Dataset Name	Marine microbial communities from Rangirora Atoll, Polynesia Archipelagos - GS051
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	J. Craig Venter Institute (JCVI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2224
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location
Location Name	Rangirora Atoll, Polynesia Archipelagos
Coordinates	Lat. (^o)	-15.143611	Long. (^o)	-147.435	Alt. (m)		Depth (m)	1
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F060874	Metagenome / Metatranscriptome	132	N

Sequences

Protein ID	Family	RBS	Sequence
GOS2266_10059632	F060874	AGG	MRKKMLAVGTGLLALMIMPARTDDSLVCGDTTFDVEQGFVGGSVTAVTATGATPFCVSDNPAVLTTTLSFRDQEVWCVTFHHLSSDSRPLAKQLWVLNRLSKKLYHYDYLFADGVWHLQDERHEICEIAQ*

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