NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold GOS2266_1008305

Scaffold GOS2266_1008305


Overview

Basic Information
Taxon OID3300001956 Open in IMG/M
Scaffold IDGOS2266_1008305 Open in IMG/M
Source Dataset NameMarine microbial communities from Rangirora Atoll, Polynesia Archipelagos - GS051
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2480
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (50.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location
Location NameRangirora Atoll, Polynesia Archipelagos
CoordinatesLat. (o)-15.143611Long. (o)-147.435Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008747Metagenome / Metatranscriptome328Y
F032291Metagenome / Metatranscriptome180Y

Sequences

Protein IDFamilyRBSSequence
GOS2266_100830510F008747AGGMAPVEESRERPAGSEGETDQPVMAPPLAEGVTVVMAVSLVNVNEFGL
GOS2266_10083055F032291N/AMAPVEESIERPEGRDGETDHDVTVPPLDVGVTAVMAVFLTKDNELGLYVMDDGAMSLTAMVTEAVVLPPVLLAVIV*
GOS2266_10083056F032291AGGAVTAVGVPEIAPVEVSNERPAGRDGETDQLVTGPPLTLGVTVVMAVPLVNVKAFGLKVKEEGATSFTTIVTSTVLVPPVLLAVTV*
GOS2266_10083057F008747GAGGVGVPLIAPVEVSNERPAGKDGETDQEMTVPPVEVGVTVVIAVPLVSVSELGL*
GOS2266_10083058F032291AGGAVMAVGVPEMAPVDESSANPAGNEGETDHVVTVPPLDVGVTVVIAVPLVSVSELGLYDRDEGAMSFTVMLTVAVVLPPVLLPVMV*
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