Basic Information | |
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Taxon OID | 3300001956 Open in IMG/M |
Scaffold ID | GOS2266_1008305 Open in IMG/M |
Source Dataset Name | Marine microbial communities from Rangirora Atoll, Polynesia Archipelagos - GS051 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | J. Craig Venter Institute (JCVI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2480 |
Total Scaffold Genes | 10 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (50.00%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
Associated Families | 2 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos) |
Source Dataset Sampling Location | ||||||||
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Location Name | Rangirora Atoll, Polynesia Archipelagos | |||||||
Coordinates | Lat. (o) | -15.143611 | Long. (o) | -147.435 | Alt. (m) | Depth (m) | 1 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F008747 | Metagenome / Metatranscriptome | 328 | Y |
F032291 | Metagenome / Metatranscriptome | 180 | Y |
Protein ID | Family | RBS | Sequence |
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GOS2266_100830510 | F008747 | AGG | MAPVEESRERPAGSEGETDQPVMAPPLAEGVTVVMAVSLVNVNEFGL |
GOS2266_10083055 | F032291 | N/A | MAPVEESIERPEGRDGETDHDVTVPPLDVGVTAVMAVFLTKDNELGLYVMDDGAMSLTAMVTEAVVLPPVLLAVIV* |
GOS2266_10083056 | F032291 | AGGA | VTAVGVPEIAPVEVSNERPAGRDGETDQLVTGPPLTLGVTVVMAVPLVNVKAFGLKVKEEGATSFTTIVTSTVLVPPVLLAVTV* |
GOS2266_10083057 | F008747 | GAGG | VGVPLIAPVEVSNERPAGKDGETDQEMTVPPVEVGVTVVIAVPLVSVSELGL* |
GOS2266_10083058 | F032291 | AGGA | VMAVGVPEMAPVDESSANPAGNEGETDHVVTVPPLDVGVTVVIAVPLVSVSELGLYDRDEGAMSFTVMLTVAVVLPPVLLPVMV* |
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