NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold GOS2250_1060849

Scaffold GOS2250_1060849


Overview

Basic Information
Taxon OID3300001957 Open in IMG/M
Scaffold IDGOS2250_1060849 Open in IMG/M
Source Dataset NameMarine microbial communities from Wolf Island, Equador - GS035
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1438
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location
Location NameWolf Island, Equador
CoordinatesLat. (o)1.3891667Long. (o)-91.81695Alt. (m)Depth (m)1.7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011578Metagenome289N
F040144Metagenome162Y
F042934Metagenome157Y

Sequences

Protein IDFamilyRBSSequence
GOS2250_10608493F040144N/AMTPTTTKEFYITRKCTKMEYFTVKAESLEQAKYEAEEGYDYYNFDWEEFDYETVDIKEQEIPEQQLTLASVGLVVL*
GOS2250_10608494F042934AGGAMKNKLNDKDYVAFTRKFVKVSVGTMGVNELRDFVINALHEDLQEVYDDLGQKGVYDDMIAWDEDVFEDVAKDFDLTLEEVD*
GOS2250_10608495F011578AGGAGGMFTSFITGVVVAIPTALVTMKLLNSSLFISNQELRETNAKISLIINNLDDFREERLKDKMERLNITDKLDPRLSTHLK*
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