NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold GOS2232_1001548

Scaffold GOS2232_1001548


Overview

Basic Information
Taxon OID3300001958 Open in IMG/M
Scaffold IDGOS2232_1001548 Open in IMG/M
Source Dataset NameMarine microbial communities from Gulf of Mexico, USA - GS016
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1897
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location
Location NameGulf of Mexico, USA
CoordinatesLat. (o)24.174723Long. (o)-84.344444Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025305Metagenome / Metatranscriptome202Y

Sequences

Protein IDFamilyRBSSequence
GOS2232_10015486F025305AGAAGMFPHMGIAHKFPYYFEPMPEIADRLNKAWFDQYFGEERMKDHIRKHKLKSHQYKAYVNYWWLKETSKNSGT*SHTYTH
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