NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold GOS2247_1022345

Scaffold GOS2247_1022345


Overview

Basic Information
Taxon OID3300001959 Open in IMG/M
Scaffold IDGOS2247_1022345 Open in IMG/M
Source Dataset NameMangrove swamp microbial communities from Isabella Island, Equador - GS032
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1422
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location
Location NameIsabella Island, Equador
CoordinatesLat. (o)-0.5938889Long. (o)-91.06944Alt. (m)Depth (m).1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029730Metagenome / Metatranscriptome187Y

Sequences

Protein IDFamilyRBSSequence
GOS2247_10223453F029730N/AMSRVDADILTEDARAALLELARLLGRMAAEDAVDQSTLDTSPPQSQKKGARDDEQ*
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