Scaffold GOS2230_1007018

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold GOS2230_1007018

Scaffold GOS2230_1007018

Overview

Basic Information
Taxon OID	3300001960 Open in IMG/M
Scaffold ID	GOS2230_1007018 Open in IMG/M
Source Dataset Name	Marine microbial communities from South of Charleston, South Carolina, USA - GS014
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	J. Craig Venter Institute (JCVI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1523
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location
Location Name	Charleston, South Carolina, USA
Coordinates	Lat. (^o)	32.506943	Long. (^o)	-79.263885	Alt. (m)		Depth (m)	1
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F022423	Metagenome / Metatranscriptome	214	Y
F046405	Metagenome / Metatranscriptome	151	Y

Sequences

Protein ID	Family	RBS	Sequence
GOS2230_10070183	F022423	N/A	MPDLEFIARTIHTMTESVQNKETLHKIMGTANEYAKTMKFPKSKTEWSDEQLDKYFNMIEKLVDMPVEYTQDDFDSLSLEDKLKAVGLEATDKTDGLQQPGGLVGKVVNQMEQQNKYRDDLKCPYCQAMVYDNRNSKKSDKSPDFT
GOS2230_10070184	F046405	N/A	DTFKLGNAKFNDGTNLKDAESDAFKRACMRFGLGVELWSGSKQSEEEATAATEPENRVEVTKVDMRKKEHKPTAEDIKRMNDIMDSIVAEGTEVDMEVKPYPKDEAPF*

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