NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold GOS2240_1016992

Scaffold GOS2240_1016992


Overview

Basic Information
Taxon OID3300001961 Open in IMG/M
Scaffold IDGOS2240_1016992 Open in IMG/M
Source Dataset NameMarine microbial communities from Dirty Rock, Cocos Island, Costa Rica - GS025
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1694
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location
Location NameDirty Rock, Cocos Island, Costa Rica
CoordinatesLat. (o)5.552778Long. (o)-87.087776Alt. (m)Depth (m)1.1
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005533Metagenome / Metatranscriptome397Y
F034958Metagenome / Metatranscriptome173Y

Sequences

Protein IDFamilyRBSSequence
GOS2240_10169921F005533AGGMSYTKNEIALETLISNINNQFYYIGEEDDKVAPIDVK
GOS2240_10169927F034958AGGAMKKSKVDQMIDNLKFCIETIGLNDEQTGDVLAATNELGVNVEYFCNEFMETSSRQAHEDDYLNIALFNAMYWEF*

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