Basic Information | |
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Taxon OID | 3300001962 Open in IMG/M |
Scaffold ID | GOS2239_1010550 Open in IMG/M |
Source Dataset Name | Marine microbial communities from Cocos Island, Costa Rica - GS023 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | J. Craig Venter Institute (JCVI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1838 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (57.14%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos) |
Source Dataset Sampling Location | ||||||||
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Location Name | Cocos Island, Costa Rica | |||||||
Coordinates | Lat. (o) | 5.64 | Long. (o) | -86.56528 | Alt. (m) | Depth (m) | 2 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F003770 | Metagenome | 469 | Y |
F007668 | Metagenome / Metatranscriptome | 347 | Y |
F008885 | Metagenome / Metatranscriptome | 326 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
GOS2239_10105503 | F007668 | GGAG | LFKVITVLISLLLSSTALASSKSLKETQGNIGNMPPPKWLGDDLKYSMPAFLFRQTQYMRFSLNREEKKMHESA |
GOS2239_10105505 | F008885 | AGG | MVSIDTSGFLDTETNNGGRISPCVAEDFATAPTTLAQSRLVSRGALRYKKMLELLQVRSNVSVRNLLTTYASDAGDQPITKLQFGLVYENDNFIPTTGTAGDGSTTTSTKIGFIKDKISEALYGTFTERMQVFNPTSGAGLISNEEITAAPVLLVSQDEIMDAITVTEALDTATMVSGFRPTLASELPTDNADSDTAE* |
GOS2239_10105506 | F003770 | GAG | MFKMFAVICAVTVLECNRMYEDPPRTFDTIEECKAAIIQKEEHTRDFLTDEDGYLTVAHLEVGCENVYN* |
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