NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold GOS2239_1010550

Scaffold GOS2239_1010550


Overview

Basic Information
Taxon OID3300001962 Open in IMG/M
Scaffold IDGOS2239_1010550 Open in IMG/M
Source Dataset NameMarine microbial communities from Cocos Island, Costa Rica - GS023
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1838
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location
Location NameCocos Island, Costa Rica
CoordinatesLat. (o)5.64Long. (o)-86.56528Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003770Metagenome469Y
F007668Metagenome / Metatranscriptome347Y
F008885Metagenome / Metatranscriptome326Y

Sequences

Protein IDFamilyRBSSequence
GOS2239_10105503F007668GGAGLFKVITVLISLLLSSTALASSKSLKETQGNIGNMPPPKWLGDDLKYSMPAFLFRQTQYMRFSLNREEKKMHESA
GOS2239_10105505F008885AGGMVSIDTSGFLDTETNNGGRISPCVAEDFATAPTTLAQSRLVSRGALRYKKMLELLQVRSNVSVRNLLTTYASDAGDQPITKLQFGLVYENDNFIPTTGTAGDGSTTTSTKIGFIKDKISEALYGTFTERMQVFNPTSGAGLISNEEITAAPVLLVSQDEIMDAITVTEALDTATMVSGFRPTLASELPTDNADSDTAE*
GOS2239_10105506F003770GAGMFKMFAVICAVTVLECNRMYEDPPRTFDTIEECKAAIIQKEEHTRDFLTDEDGYLTVAHLEVGCENVYN*
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