NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold GOS2239_1038092

Scaffold GOS2239_1038092


Overview

Basic Information
Taxon OID3300001962 Open in IMG/M
Scaffold IDGOS2239_1038092 Open in IMG/M
Source Dataset NameMarine microbial communities from Cocos Island, Costa Rica - GS023
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1642
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location
Location NameCocos Island, Costa Rica
CoordinatesLat. (o)5.64Long. (o)-86.56528Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004336Metagenome443Y
F006818Metagenome364Y
F092713Metagenome107N

Sequences

Protein IDFamilyRBSSequence
GOS2239_10380922F092713AGAAGGVDEGLVFAWFIAVALGVSGAVAKAKKSAFTDYKIRSLQGKAAAQVFGVLGAIVFGVGLLMYSGLLARTEYIVGVSALTYAAFSQYSPVNGALSFLTVAYKTEFAIDDWVKISNEADISKVKSKILV
GOS2239_10380923F004336GAGMRFIRNMLFSTGRYPSTMGAGGQQDVEFCRYIEWVWFKRCVWLMGIGFALGGIGLYIGYYYDSVVTEYGMAIWGVAWLYNGFLMFVMAVSILLSMIKALVVKAFVSPEVQVGQAATRTAQMMRKGGL*
GOS2239_10380924F006818AGGTGGMAGPPQMTTLVRKNPQHTLTEEPAREVAPAPNVLTRQPVQQQMMPTAEAMSDEELDLYVKRLSMRHKRLSRKWWGLRRKHGKDECPYCGMATGGGFCKLHQRDYDEYLSALSTRQNRRFGL*
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