Basic Information | |
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Taxon OID | 3300001962 Open in IMG/M |
Scaffold ID | GOS2239_1038092 Open in IMG/M |
Source Dataset Name | Marine microbial communities from Cocos Island, Costa Rica - GS023 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | J. Craig Venter Institute (JCVI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1642 |
Total Scaffold Genes | 4 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos) |
Source Dataset Sampling Location | ||||||||
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Location Name | Cocos Island, Costa Rica | |||||||
Coordinates | Lat. (o) | 5.64 | Long. (o) | -86.56528 | Alt. (m) | Depth (m) | 2 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F004336 | Metagenome | 443 | Y |
F006818 | Metagenome | 364 | Y |
F092713 | Metagenome | 107 | N |
Protein ID | Family | RBS | Sequence |
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GOS2239_10380922 | F092713 | AGAAGG | VDEGLVFAWFIAVALGVSGAVAKAKKSAFTDYKIRSLQGKAAAQVFGVLGAIVFGVGLLMYSGLLARTEYIVGVSALTYAAFSQYSPVNGALSFLTVAYKTEFAIDDWVKISNEADISKVKSKILV |
GOS2239_10380923 | F004336 | GAG | MRFIRNMLFSTGRYPSTMGAGGQQDVEFCRYIEWVWFKRCVWLMGIGFALGGIGLYIGYYYDSVVTEYGMAIWGVAWLYNGFLMFVMAVSILLSMIKALVVKAFVSPEVQVGQAATRTAQMMRKGGL* |
GOS2239_10380924 | F006818 | AGGTGG | MAGPPQMTTLVRKNPQHTLTEEPAREVAPAPNVLTRQPVQQQMMPTAEAMSDEELDLYVKRLSMRHKRLSRKWWGLRRKHGKDECPYCGMATGGGFCKLHQRDYDEYLSALSTRQNRRFGL* |
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