Scaffold GOS2229_1049781

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold GOS2229_1049781

Scaffold GOS2229_1049781

Overview

Basic Information
Taxon OID	3300001963 Open in IMG/M
Scaffold ID	GOS2229_1049781 Open in IMG/M
Source Dataset Name	Marine microbial communities from Nags Head, North Carolina, USA - GS013
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	J. Craig Venter Institute (JCVI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1770
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location
Location Name	Nags Head, North Carolina, USA
Coordinates	Lat. (^o)	35.6	Long. (^o)	-75.82	Alt. (m)		Depth (m)	2.1
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005819	Metagenome / Metatranscriptome	389	Y

Sequences

Protein ID	Family	RBS	Sequence
GOS2229_10497814	F005819	N/A	TKSMDYIDDMSLALPNQQQVGESNIDFKRFQYYLGLGASRTLKKVSQNFSLSDRRIYQIAAKNQWTDRVKAINKMLNEQIISEVFAQVGETARDLADNLKPLIFRIISEINERDLASMNPTELKGILDICYKIISQIYGLGQPQVTVNHIEQPQIRFKWDWEQDDDTFT*

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