NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold GOS2243_1002249

Scaffold GOS2243_1002249


Overview

Basic Information
Taxon OID3300001965 Open in IMG/M
Scaffold IDGOS2243_1002249 Open in IMG/M
Source Dataset NameMarine microbial communities from Coastal Floreana, Equador - GS028
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1607
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location
Location NameCoastal Floreana, Equador
CoordinatesLat. (o)-1.2169445Long. (o)-90.319725Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000681Metagenome / Metatranscriptome939Y
F000724Metagenome / Metatranscriptome919Y

Sequences

Protein IDFamilyRBSSequence
GOS2243_10022491F000681N/AISTEDLYKELNTNYTGETDLVQSLMSRAISNGWVQTRHELGVANEELWSLNDWPEGEGFGSSDHFEYDRRIQESIAFERKFLQAENELVQINKLTESPTNDTVRKYMTMNEKLKEGMVA*
GOS2243_10022495F000724AGGAGGMPKKNDTWIIGMPKGPIGPFVWQVWLKDSKKPLRVVAFDMTHIQHQLEGKVIKKAKKLPEEKEPTSKMMPLGPKGGNGVSRPADYDAGFKVLRKWVDENGGPPEEIRQKLRELYIDYDRAKKKR
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