NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold GOS2245_1109372

Scaffold GOS2245_1109372


Overview

Basic Information
Taxon OID3300001966 Open in IMG/M
Scaffold IDGOS2245_1109372 Open in IMG/M
Source Dataset NameMarine microbial communities from Roca Redonda, Equador - GS030
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1674
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location
Location NameRoca Redonda, Equador
CoordinatesLat. (o)0.27222222Long. (o)-91.63333Alt. (m)Depth (m)19
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F083754Metagenome / Metatranscriptome112Y
F096285Metagenome105N

Sequences

Protein IDFamilyRBSSequence
GOS2245_11093722F083754N/AMKEKELEAKAAIYRKKWKAKMFLQSGSFFDEQNPKCGWEDNAPVINMPQTTEDVKKYFQEYEKQEAENNPTWWDRIGQKQSKIHQEIYELPENVQIYIAGLNMAIESQVLAPWEGVLSRFFYAQHEWDLFLILDMLKKTSDIYGMDDGPWPLYWFQSRELLFEALHRYPDLIKNRVGRSLPLRIWDQKDFVKEIVAVNFELFKTAPRHIKESRDKVLEAAEVDGRIIGFIKTNMRNDPEVAMTAVNSHADAKDYLFKKTRDELGLI*
GOS2245_11093723F096285AGGLGFDSIWILAALMNWLKTAAIGIWIRAHSDLLFRAIVSLGIFWILNSVYSKYEAVLLATNPEKLFIPLYIYTFIILALVIWTLLALRWVSGMAVAKKKVAAKESFTNKSDEYKKIADVKNYPKLKTKKDSIIES*
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