NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold GOS2242_1043319

Scaffold GOS2242_1043319


Overview

Basic Information
Taxon OID3300001967 Open in IMG/M
Scaffold IDGOS2242_1043319 Open in IMG/M
Source Dataset NameMarine microbial communities from Devil's Crown, Floreana Island, Equador - GS027
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1948
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location
Location NameDevil's Crown, Floreana Island, Equador
CoordinatesLat. (o)-1.2161111Long. (o)-90.422775Alt. (m)Depth (m)2.2
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017488Metagenome / Metatranscriptome240Y

Sequences

Protein IDFamilyRBSSequence
GOS2242_10433192F017488AGGAGMAFITDSGGNVISFAEYTDVLQKDQRLLEANEIVVPDESGFADKTDFVEDMLEKSTNRILLKIKASTWWQGYNSYVGNAISDLNNLPNVNANLIDPGNSLGRQQQFTDMCVYYCLAQYLLPLIADFGNEESSTFQKITYYEAKFTDIYNELISIADWYDYDNSGTVDADEKAVTYFQTRRTRRRASVVKIR*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.