NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold GOS2233_1057826

Scaffold GOS2233_1057826


Overview

Basic Information
Taxon OID3300001969 Open in IMG/M
Scaffold IDGOS2233_1057826 Open in IMG/M
Source Dataset NameMarine microbial communities from Yucatan Channel, Mexico - GS017
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)760
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
unclassified Hyphomonas → Hyphomonas sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location
Location NameYucatan Channel, Mexico
CoordinatesLat. (o)20.5225Long. (o)-85.41361Alt. (m)Depth (m)2
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003361Metagenome / Metatranscriptome492Y

Sequences

Protein IDFamilyRBSSequence
GOS2233_10578261F003361AGGAMKLTLKGALDLSRSINNQSIWNKRSVDFFNDLGRDLVQDAKDRLRLPPSPQSKSSKSSGKAQRSIFFKKLGNTNVLRMSKGISLATSVPYAPFIHGKPIYRSFRPIKRTKPFFPPYKEGSSLAAWAKRGQPKMNAFLVARKISKTGLKMKPFMEVQF

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.