NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold GOS2248_10035501

Scaffold GOS2248_10035501


Overview

Basic Information
Taxon OID3300001970 Open in IMG/M
Scaffold IDGOS2248_10035501 Open in IMG/M
Source Dataset NameHypersaline microbial communities from Punta Cormorant, Floreana Island, Equador - GS033
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3291
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (44.44%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified → Hypersaline → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location
Location NamePunta Cormorant, Floreana Island, Equador
CoordinatesLat. (o)-1.2283334Long. (o)-90.42917Alt. (m)Depth (m).2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F054793Metagenome139Y
F103102Metagenome101N

Sequences

Protein IDFamilyRBSSequence
GOS2248_100355012F103102N/AMAPDKFVEQLNIAEAAADVTMREFMQDHLRKYHAGQLTTNQKLVAAGVMVGVAAVTAACTPQGRRVIRGTTTKVRCKIARFFAPKEVNVHPEDPAVDFVDVTAK*
GOS2248_100355016F054793AGGAGGMPPPVIAQYVGMGSYTVEKSMHVYTLTQFNSGEYCEEPRVIGYYASKRKADAMSVELSVRQAKEEEEDWIANPCECGDRNCERRDRFFNEWSVERFDLTELSMRELMKIELADADQD*
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