NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold GOS2215_10120457

Scaffold GOS2215_10120457


Overview

Basic Information
Taxon OID3300001971 Open in IMG/M
Scaffold IDGOS2215_10120457 Open in IMG/M
Source Dataset NameMarine microbial communities from the Sargasso Sea - GS000c
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6799
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (54.55%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location
Location NameSargasso Sea
CoordinatesLat. (o)32.174835Long. (o)-64.01017Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006793Metagenome364Y
F012584Metagenome279Y
F016820Metagenome244Y
F024809Metagenome204Y
F038719Metagenome165Y
F047122Metagenome150Y

Sequences

Protein IDFamilyRBSSequence
GOS2215_1012045717F012584N/ALLNHTSLKKNETKTLLPENTFILNEDSLPTQSDADPYGKVMVFRKDVGWTVVQLTEVIQYVAMKHTHWTFTPETP*
GOS2215_1012045718F016820N/AMIKKEFSYVVISSSGEKLEQIYGVYKDVEGACYGARSALTTLFPKHGDEAKIIRCEIISTEEAKNQFEDSKPQDLFEKADCEDGYCPLPTQKVL*
GOS2215_1012045719F006793N/AMTNFRSTNEEKEQRINYAADQLAKGERSMVIVKKLAKKYNVSPQQARDYAREGRKVLTDSIAPNDRAFIFSKVMSCLEQDRLDARDHENFKEQGKSTGGMVKMVGIFTSIDQVGSWDSASDQYLFKNFSEVKKKIKHSDLDALDNDLPEGEIPF*
GOS2215_1012045721F047122GAGGVKCPKCNKKAKASATRFIEYNHAQRRIRTCECGFKFVTYERIELDKQDLGQHSKEKKKEYYRKVLKELIDDLEGRTYLDKENEEKFRIWEGV*
GOS2215_101204573F038719GGAGGMDSKTREKILHRCEILRYMGDDGISCIFDQLPDDELMEDCGWVLDKEHDDLDNFQFGLTRKIINKAAARAAKDMWS*
GOS2215_101204575F024809AGGMNYSQKVLFDDWINKCPIEGVYVDEPVSQVKMDDGEFGYLIQVFLIINKEDWEQNQSPPGIS*
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