NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold GOS2217_10047806

Scaffold GOS2217_10047806


Overview

Basic Information
Taxon OID3300001973 Open in IMG/M
Scaffold IDGOS2217_10047806 Open in IMG/M
Source Dataset NameMarine microbial communities from Bermuda, Atlantic Ocean - GS001
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1890
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location
Location NameBermuda, Atlantic Ocean
CoordinatesLat. (o)32.166668Long. (o)-64.5Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020842Metagenome / Metatranscriptome221Y

Sequences

Protein IDFamilyRBSSequence
GOS2217_100478063F020842N/AKRGGWRIAYVIVSSFAIVASLMAFRVMPHVPPPEWTQEEKQQSPLAVAAQEIKTMITFLKYPSFVLMIAQGIFGSIPWLVIGNLNLYARLCGFEMWTLFWLSAPGLFGVVGGFLGGIVSDFLAKKMGPRGRPLTAMLTVAMGVPLQFVMWYAIAPGSSLNNVWVFFLIQALFNLTAVWAQPGCNFPVLGQIVTGKDRNKVMCWEMAFENTMATIIGSNAVPYVIKALGSSKITYDGHQDLEQARTLGIAQAIMICCPWLICFGIYSLLLWSFPVDIKRVDKDMALVEKKGAEPESQI*
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