NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold GOS2217_10091048

Scaffold GOS2217_10091048


Overview

Basic Information
Taxon OID3300001973 Open in IMG/M
Scaffold IDGOS2217_10091048 Open in IMG/M
Source Dataset NameMarine microbial communities from Bermuda, Atlantic Ocean - GS001
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1661
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location
Location NameBermuda, Atlantic Ocean
CoordinatesLat. (o)32.166668Long. (o)-64.5Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001607Metagenome / Metatranscriptome664Y
F001614Metagenome / Metatranscriptome663Y
F081297Metagenome / Metatranscriptome114Y

Sequences

Protein IDFamilyRBSSequence
GOS2217_100910482F001614N/AFLTAIAALLYARARVAEFERATHDLDWQQVSELSLDVAKLKKASQKWQNNMNAQEAVSLKTLKEQALMQSLMQQPGNVQQIRKVEM*
GOS2217_100910483F081297AGCAGGMAIRPSVPEVITVNSEALQTQIRDLLPSQNGFGSELQASNVITPIIDLTAAAEGSTTPVQLQEALNFTDITANFVTGSATTTIINQVGFFLVD
GOS2217_100910484F001607AGGMPVLANNLSLTAGSQSVNVFDNSNYQFVNEGTELRISAAVVGANDGVQGSNVNYRFTINNTEFADDAIVPTLVTGEPFTDGAASYRTNSVIATGQARNRPLLVFRNQTSGTLIVKYYVFISQQA*
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