Scaffold GOS2217_10124992

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold GOS2217_10124992

Scaffold GOS2217_10124992

Overview

Basic Information
Taxon OID	3300001973 Open in IMG/M
Scaffold ID	GOS2217_10124992 Open in IMG/M
Source Dataset Name	Marine microbial communities from Bermuda, Atlantic Ocean - GS001
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	J. Craig Venter Institute (JCVI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1870
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location
Location Name	Bermuda, Atlantic Ocean
Coordinates	Lat. (^o)	32.166668	Long. (^o)	-64.5	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F084330	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
GOS2217_101249921	F084330	AGAAGG	MASRLVSVSKNIFGNAFYSNIWIAISFGLISQVIGYTKYEGYFDLYWIVMKDGFLYFNLYPSFDELSAVLFIRVFLAVFVFLT

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