NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24739J22299_10017474

Scaffold JGI24739J22299_10017474


Overview

Basic Information
Taxon OID3300001989 Open in IMG/M
Scaffold IDJGI24739J22299_10017474 Open in IMG/M
Source Dataset NameCorn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2587
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameKellogg Biological Station, Michigan, USA
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001440Metagenome / Metatranscriptome694Y
F003142Metagenome / Metatranscriptome505Y
F010430Metagenome / Metatranscriptome304Y

Sequences

Protein IDFamilyRBSSequence
JGI24739J22299_100174742F003142N/AMVSNFQDSSPLDNCPDASGDDLXGDSKMNHHDLITIQQITNLVERGKSREEIAELIEVTIDSLQVTCSRLGISLRRPRLDNGIRLLPRGKPVPSDGRTTPDLSCDVSVPLQPIAERRQDSQPGPEQTQYTTPHQAGSKAKEMDFANLALTMRYKGEERTTELALTQLAIGQLALEAGLRDMSIGELVSELLTATIQKNLFQRALDIS*
JGI24739J22299_100174744F001440AGGMPNAKSIGWAIYAAGFVVWLFGYLSAGHVSVIDWPWWISSFVPNLEAELGLALMFASMIPIYWRAGRKRX*
JGI24739J22299_100174746F010430N/AEAPSAMGAGGAAMKCLACGAEMRLIDVRPDRTTVCGIERHTFRCSACTHTAQRLTLNRARVPITNLPVVIPPKAPVIDPHNGRPVAQSAWAKSIEKVNNKEAELKQRAAATTEWGSVVEKLSVRLKQQAVAARAEALARTVEKLRSLHTGLLVRMSDSEFDRVWYGHCPDEAAPKPVALGPNH*
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