NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24737J22298_10070325

Scaffold JGI24737J22298_10070325


Overview

Basic Information
Taxon OID3300001990 Open in IMG/M
Scaffold IDJGI24737J22298_10070325 Open in IMG/M
Source Dataset NameCorn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1045
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameKellogg Biological Station, Michigan, USA
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023125Metagenome / Metatranscriptome211Y
F088165Metagenome / Metatranscriptome109Y

Sequences

Protein IDFamilyRBSSequence
JGI24737J22298_100703251F088165AGGAGGVNVRVDEVQMVPDGFGFHLQASEYTWVTLVXETKAEAEAAHSHAAKAVAKAKALKIVNR*
JGI24737J22298_100703252F023125N/AKTVASESQITPAECRARAAECQKMAQNARRPHVRDTLAEIERMWNRLAVEAEVSEAMLTRFLEGVAFGPDEIAIMVAAYEVGLTQINVSGHNDPTAETLAQTIVMLAKRGERDPIRLEQRAIEIISGQPQDVAGPTQT*
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