NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold MIS_1168950

Scaffold MIS_1168950


Overview

Basic Information
Taxon OID3300002024 Open in IMG/M
Scaffold IDMIS_1168950 Open in IMG/M
Source Dataset NameSinkhole freshwater microbial communities from Lake Huron, USA - Flux 1k-1.5k
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1261
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Sinkhole Freshwater → Sinkhole Freshwater Microbial Communities From Lake Huron, Us

Source Dataset Sampling Location
Location NameMiddle Island Sinkhole, Lake Huron Michigan, USA
CoordinatesLat. (o)45.19843Long. (o)-83.32721Alt. (m)Depth (m)23
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F096161Metagenome105N

Sequences

Protein IDFamilyRBSSequence
MIS_11689501F096161N/ADGFSQLSASFSSEAGAVLTFLLTFCVKTKSESGFGAESPTLKY*

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