NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold GOS24894_10089003

Scaffold GOS24894_10089003


Overview

Basic Information
Taxon OID3300002033 Open in IMG/M
Scaffold IDGOS24894_10089003 Open in IMG/M
Source Dataset NameMarine microbial communities from the Sargasso Sea - GS000a &b
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)28074
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location
Location NameSargasso Sea
CoordinatesLat. (o)31.175Long. (o)-64.32433Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006793Metagenome364Y
F024809Metagenome204Y
F073646Metagenome120Y

Sequences

Protein IDFamilyRBSSequence
GOS24894_1008900313F006793N/AMTNFRSTNEEKEQRINYAADQLAKGERSMVIVKKLAKKYNVSPQQARDYAREGRKVLTDSIAPNDRAFIFSKVMSCLEQDRLDARDQENLKEQGKATGGMVKMVGMLTTIDQVGCWEDSYNSHLFKNFSEAKKKVKHSDLDALDNDLPEGEIPF
GOS24894_1008900317F073646AGGAGGMLQSEYLDIAIELYDIYSEHDIHHKKWLSARELAKLKGGPGLIAKVKRGKGLLSELKPIFADYVNTQTQYQSCNTPQQWTCKFDDWLFNEYEFTNQELDELRSDKNRQGGCKTSEKVTNG
GOS24894_1008900322F024809AGGMNYSQKVLFDDWINKCPIEGVYVDEPVSQVKMDDGEFGYLIQVFLIINKEDWEQN
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