Scaffold SMTZ23_10043020

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold SMTZ23_10043020

Scaffold SMTZ23_10043020

Overview

Basic Information
Taxon OID	3300002053 Open in IMG/M
Scaffold ID	SMTZ23_10043020 Open in IMG/M
Source Dataset Name	Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR_SMTZ
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	8224
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (68.75%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Sediment → Marine Sediment → Marine Sediment Microbial Communities From White Oak River Estuary, North Carolina

Source Dataset Sampling Location
Location Name	White Oak River estuary, North Carolina, USA
Coordinates	Lat. (^o)	34.6478111	Long. (^o)	-77.1112083	Alt. (m)		Depth (m)	.24 to .32
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F082079	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
SMTZ23_100430202	F082079	GAG	MQIRLLHAIMSGIIIALVLGFSLIPTIWQMISRQYEEPTFGPTPNGVAIIGIIGSVAIMAITLLSFKLVRRTEE*

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