Scaffold SA1_1001750

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold SA1_1001750

Scaffold SA1_1001750

Overview

Basic Information
Taxon OID	3300002057 Open in IMG/M
Scaffold ID	SA1_1001750 Open in IMG/M
Source Dataset Name	Macroalgal surface ecosystem from Botany Bay, Galicia, Spain - SA1-P2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	J. Craig Venter Institute (JCVI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3252
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → unclassified Flavobacteriia → Flavobacteria bacterium MS190-1F	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Algae → Green Algae → Ectosymbionts → Unclassified → Macroalgal Surface → Macroalgal Surface Microbial Communities

Source Dataset Sampling Location
Location Name	Vigo, Galicia, Spain
Coordinates	Lat. (^o)	42.52	Long. (^o)	-8.82	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028441	Metagenome / Metatranscriptome	191	Y

Sequences

Protein ID	Family	RBS	Sequence
SA1_10017506	F028441	N/A	MKHTMTLKQLIKLENKADTVWVISPTLHYDTENKDFSELVSVNLDAKKKYRYIVPATKQVEKNLKLYQKMYKLTDKEMFTNFLLLPDCDFNGFLTETVIYNAGKECIACTAPPLESTNDIIKYGPKTAKAMAKQFKTTWKKYMRMNP*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.