Scaffold SA2_1002255

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold SA2_1002255

Scaffold SA2_1002255

Overview

Basic Information
Taxon OID	3300002062 Open in IMG/M
Scaffold ID	SA2_1002255 Open in IMG/M
Source Dataset Name	Macroalgal surface microbial communities from Vigo, Galicia, Spain - SA2-P2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	J. Craig Venter Institute (JCVI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4163
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Algae → Green Algae → Ectosymbionts → Unclassified → Macroalgal Surface → Macroalgal Surface Microbial Communities

Source Dataset Sampling Location
Location Name	Vigo, Galicia, Spain
Coordinates	Lat. (^o)	42.52	Long. (^o)	-8.82	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F028441	Metagenome / Metatranscriptome	191	Y

Sequences

Protein ID	Family	RBS	Sequence
SA2_10022552	F028441	N/A	MTLKQLIKLENKATEVWVISPTLHYDVDNKDFTEIVSVNLGEKTKYRYIVPASKTVLKNVKLYKKMYDISDEEVERNFLFLPETDFNPFITECAIYNASTEGVAVAAPATEDSNDVIRFNADTSADMAKHFKAVWRKYKRRNP*

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