NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGIcombinedJ21911_10059401

Scaffold JGIcombinedJ21911_10059401


Overview

Basic Information
Taxon OID3300002066 Open in IMG/M
Scaffold IDJGIcombinedJ21911_10059401 Open in IMG/M
Source Dataset NameBarrow Graham LP Ref core NGADG0002-211 (Barrow Graham LP Ref core NGADG0002-211,NGADG0004-311, ASSEMBLY_DATE=20131004)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1257
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Source Dataset Sampling Location
Location NameUSA: Alaska
CoordinatesLat. (o)71.28381Long. (o)-156.5985Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F104688Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
JGIcombinedJ21911_100594012F104688N/AMKETMIMIRFRRMVTVLVTTMALTVVALGSAAPAVGAAGLRNCVDITGPQSGRVGCYELVWVNGSQHRMTFSNTSFQGATPKELDAFYVVAPQTDTPQGAPPNTFPHDHVVRDAPAQNHGSYSVHLQGYFVFCSALGIGTGSCVPAMTTIQGFGTVPFAKTVNGQPLTSAA
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