Scaffold JGIcombinedJ21914_10004478

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGIcombinedJ21914_10004478

Scaffold JGIcombinedJ21914_10004478

Overview

Basic Information
Taxon OID	3300002072 Open in IMG/M
Scaffold ID	JGIcombinedJ21914_10004478 Open in IMG/M
Source Dataset Name	Barrow Graham LP Ref core NGADG0011-211 (Barrow Graham LP Ref core NGADG0011-211,NGADG0004-312, ASSEMBLY_DATE=20131005)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5502
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Source Dataset Sampling Location
Location Name	Barrow, Alaska, USA
Coordinates	Lat. (^o)	71.290565	Long. (^o)	-156.788622	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F006577	Metagenome	370	Y
F062296	Metagenome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
JGIcombinedJ21914_100044781	F006577	N/A	FIDSGARSNLLELNGARSNPXAGVELARLGALHDELLRKALVDPREPRPVPARVSPVLETVTLVLERAGEPMRARDIHAAAEQLAGEPLLWTSVKAALAAYAEGSEARFERVRRGNYRIKGHVARPSG*
JGIcombinedJ21914_100044785	F062296	AGG	VLETVTLVLALAGKPMRVREIHAAAEQLAGEPLLWTSVKAALAADTTGESPHFERVRRGVYETAKNVSARRDPRL*

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