Scaffold JGI24806J26614_1020227

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI24806J26614_1020227

Scaffold JGI24806J26614_1020227

Overview

Basic Information
Taxon OID	3300002090 Open in IMG/M
Scaffold ID	JGI24806J26614_1020227 Open in IMG/M
Source Dataset Name	Soil microbial communities from Manhattan, Kansas, USA - Sample 200um MDA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	705
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Kansas (Konza Prairie Natural Area And Manhattan, Kansas, Usa)

Source Dataset Sampling Location
Location Name	Manhattan, Kansas, USA
Coordinates	Lat. (^o)	39.214	Long. (^o)	-96.5852	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F018834	Metagenome	233	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24806J26614_10202272	F018834	GAGG	MGFARPVTANNEKGMWRSHVIITWYAGKFDLHDDVCFTTEMEAEEHAIELGKHWVNNRIQSMQRGPIHLLSY*

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