NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold JGI24028J26656_1000226

Scaffold JGI24028J26656_1000226


Overview

Basic Information
Taxon OID3300002091 Open in IMG/M
Scaffold IDJGI24028J26656_1000226 Open in IMG/M
Source Dataset NameLentic bog actinobacteria communities from Grosse Fuchskuhle, Germany - Sample acI-B2 co-culture F-F8 metagenome
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)22155
Total Scaffold Genes47 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)38 (80.85%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Associated Families7

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Lentic → Lentic Enriched Actinobacterial Communities From Dystrophic Bog Grosse Fuchskuhle, Brandenburg, Germany

Source Dataset Sampling Location
Location NameBrandenburg, Germany
CoordinatesLat. (o)53.1666Long. (o)13.0333Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007166Metagenome / Metatranscriptome356Y
F007848Metagenome343Y
F014955Metagenome258Y
F017107Metagenome242Y
F027764Metagenome193Y
F045569Metagenome152N
F046243Metagenome151Y

Sequences

Protein IDFamilyRBSSequence
JGI24028J26656_100022610F017107AGGAMSQDYSENYLRIQKLLRCYHNATLKKQYEKATLIAHDLAEETIKLEFSTYAQVKQQWLK*
JGI24028J26656_100022613F014955GGAGMDIEKYIVAATGLGYLVVGLAQYFKGSTSNALIWLGYAAAQIGLWMNLK*
JGI24028J26656_100022619F007848GGAMKDILGACLLGALFAAMFVYGIPAKAQTYXVTDARGYNQGTVQINGNTAQFVNPQGYTTQTATIYPNQVVITTPNGYTQSVVGNTGYTVPLSPSTPSSPRVLQ*
JGI24028J26656_10002262F046243AGGAMKHMTRSYPPENAMLRPHKESTLEKQLKKRQEHNPPLELDESGILNKKANQRMKRKQALMDAMNKNHDPDIVG*
JGI24028J26656_100022623F007166GGAMGELNQLMLEMEERLEIALNNMEFGTELNQDDVDVIRAACGKPNNTRNVLLQTVFDDFGNIFGGQNATK*
JGI24028J26656_100022631F027764GAGGMNIQIEIVKENEDGSADALVHFDKEGLEILVEAGVISILRQYIEQEKNASKRKKRKSND*
JGI24028J26656_100022636F045569GAGVELDPIKFGITIQKVEAMEYEVAELRKDVKQLLELANKGRGGFWAGMAIVSAFSTFIGFMSHYITGK*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.