Scaffold JGI24219J26650

Basic Information
Taxon OID	3300002098 Open in IMG/M
Scaffold ID	JGI24219J26650_1001563 Open in IMG/M
Source Dataset Name	Lentic bog actinobacteria communities from Grosse Fuchskuhle, Germany - Sample acI-B2 co-culture F-B7 metagenome
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300002098 Open in IMG/M

Scaffold ID

JGI24219J26650_1001563 Open in IMG/M

Source Dataset Name

Lentic bog actinobacteria communities from Grosse Fuchskuhle, Germany - Sample acI-B2 co-culture F-B7 metagenome

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6764
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (83.33%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

6764

Total Scaffold Genes

12 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

10 (83.33%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Lentic → Lentic Enriched Actinobacterial Communities From Dystrophic Bog Grosse Fuchskuhle, Brandenburg, Germany

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Lentic → Lentic Enriched Actinobacterial Communities From Dystrophic Bog Grosse Fuchskuhle, Brandenburg, Germany

Source Dataset Sampling Location
Location Name	Brandenburg, Germany
Coordinates	Lat. (^o)	53.152741	Long. (^o)	13.022518	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Brandenburg, Germany

Coordinates

Lat. (^o)

53.152741

Long. (^o)

13.022518

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F001059	Metagenome / Metatranscriptome	790	Y
F003521	Metagenome / Metatranscriptome	481	Y
F004695	Metagenome	427	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
JGI24219J26650_10015632	F003521	GGA	MKSLVKNIREYFNRRTKATDAYKEANLEKRTLVIQNGEVASRLMLNTDFALMFNLYRFGMLERLEEAKTDEERIGNAYYVAGVRDFIDFVEKTEYLARVANKKAEI*
JGI24219J26650_10015633	F004695	AGGA	MLDRQNIIVESLESPPANKGLEYQVAHEAYLKMVDYLRLTQAKNTLNRLSDYHYLNIPVSNSTEPIRGIDYISPVVSPGIDYSTDVITKCLMPDGKVNFEFERLSENDAIASQQAEKMVTYFINSKNDSYQIVRDWAQDSLLHKNGVVMISPIREPITQYKEVEGTRDNLRSFEIMAAEKGLVAKRQQMRRIDVDLQGVAQETMMPDETGQPTEPTTDEMQDAIKAHTIYRAKYKLTGFSTNIRIKHVAQHYFVCNPTIPGIQNQDFCGFYMPMTIHEAKSQYPYIDLEKFADHAAYGPAGAYQAGALENDLALHARDSTPVPGQGVIASAGADRYSRVVMLTTAWLRKDVDNDGEEEIVEVCYSGSYVLYIKEVDFIPMASMCPKPIVGNFFGYSQAERLVPLQEYKTAINRAEIAFALQASTPRMGVNPEFIDAEEIQRGVSALFILDRKFDPTKHVFEFAPLQGNLGYIQDAMERFESDNNRMLGMTSAADTLNPEVMKDGNSGYKLQLAMGPNQIIQXAMVKNCAIGLRDMIYIVWKTMIQYSDDYNIQQLADAMSSGQPFLDAKAMENFDFIDRKMINIDLALGFLSDENRITRQQLIMQAQQQFAQAMMQLDPSVPXMFAKLRRPFEDTLYALGVKHCDAYLPTLEEATKIAQAKAQQGPSPEQQEIQTKVEMNKAKAGETAMNTQLIKKKIEDIDVDNYYTGIAAKKGKLSAVEMD*
JGI24219J26650_10015636	F001059	AGGA	MATYDLEALKADLPTAKDLAQFVYDKTQIALDLVGKSKDDQYQVAKNALEGKKIPAEFLTEENPYVDKKDLIPVDELKVMPPRNKDLPDPETQVHYFGATNMPHPLDPQSDKKVAIDFRKYENGLITYQVVAPVEQMAVGSRINKYGQTVPEKYTWLDPRTEELIMRRPDGTYTERGRGLYTYLIGEKGGGVWSLIDRDMVSVSAKNIADPWA*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold JGI24219J26650_1001563

Overview

Ecosystem & Geography

Associated Families

Sequences