Scaffold JGI24219J26650

Basic Information
Taxon OID	3300002098 Open in IMG/M
Scaffold ID	JGI24219J26650_1001588 Open in IMG/M
Source Dataset Name	Lentic bog actinobacteria communities from Grosse Fuchskuhle, Germany - Sample acI-B2 co-culture F-B7 metagenome
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300002098 Open in IMG/M

Scaffold ID

JGI24219J26650_1001588 Open in IMG/M

Source Dataset Name

Lentic bog actinobacteria communities from Grosse Fuchskuhle, Germany - Sample acI-B2 co-culture F-B7 metagenome

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6694
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (50.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

6694

Total Scaffold Genes

8 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (50.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Lentic → Lentic Enriched Actinobacterial Communities From Dystrophic Bog Grosse Fuchskuhle, Brandenburg, Germany

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Lentic → Lentic Enriched Actinobacterial Communities From Dystrophic Bog Grosse Fuchskuhle, Brandenburg, Germany

Source Dataset Sampling Location
Location Name	Brandenburg, Germany
Coordinates	Lat. (^o)	53.152741	Long. (^o)	13.022518	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Brandenburg, Germany

Coordinates

Lat. (^o)

53.152741

Long. (^o)

13.022518

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F010759	Metagenome	299	Y
F017591	Metagenome	239	Y
F022657	Metagenome / Metatranscriptome	213	Y
F103136	Metagenome	101	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
JGI24219J26650_10015881	F103136	N/A	VVSNLNTNSGPMARFVKMKSLLDQKCAANLRLLATKNNINRNSDYQYLTIPVTQSTDPVNGLDYIHPVVKPMVDYVSAVINKGLAQNGEVNFEFVADNESDDAAARQATNMVHKLINQNNDPHFILQHWIMDACLHKNGEMLISPMREQVVRYVTTSGTADQLKAFEQQAADAGLTARRNSRRKKSVNMEQVVAETQQFLQSADQDQAEQTIQSRIDRSRAIAKGDDAQNPVEDFSEENNIQLQDGEDALDEAIARNTVYEAEYKLTGYTINVKFRPIAQHYWMCDPTVIEIQEQPFCGFYKPMSIQEATELYPDIDLEEFKIYAEXSNVGSYQAGSXLNNLAIHARDSVPINGLPAQGYSAQEPEARQVTVLTVWNRYDIDGDGELELVELIYSGQYVISAKEVEFIPVANMCPKPLPQNFYGMSIAESVIPMQEYMTSGYRAELMMGLLQSTPRIGVKPDRVDFEMMQDGEAAIFILDSKFDPSKDIYPMPTPQGNPTFMDNTINRMQQDSMAMIGMTSPTDMFNPEVMDPGNSGAKLQLALSPSQIIQDNTVKNCAEGLKDAIWLVWRTLIAHADDYGVRKLAQEFNTEGKPVFLDAENFDNMEFNDRKTIHIDLALGMRSEENSLQRLQIXKQTQTQLSAEVAQAMQMGLTDPDLFKKMRKPYEDTLYVLGVKDCDAYLVTLDEVTKMAQQAGQKAQQAQESAKNNPNPDDQKKIASANLDKVRADEIMASMQGNTADKQLEGYALINEHKAKAYGA*
JGI24219J26650_10015884	F022657	AGGAG	MAGFIXTASIGNGTTTYQTDIVVKDLDLDVSNRVKDDTPVLNMCMAKKRKVVSTLPLWTNDVYRLPQIQANTEGQQLLQV*
JGI24219J26650_10015887	F010759	N/A	MESTRKGAFFLAINRCMTINDEFANYQDKSELDGPDPEFDETAYRWDKGGLATTDNGIADRLLQNDVLYNQLKGNWTNTGYNLSKNIKTTTGRDHGKMYLTKEQFNIPAIMEHCADYRKRAEAGFMDPLAPIMPDGKLGYKWMELPEAISFEISNKYFGGMPWAAIKRDRSLKAQFYKVVEQEYNSFVCYPGGKLPIPVEVPYPNPVGSEKFFKGHRV*
JGI24219J26650_10015888	F017591	AGG	MSNNFPIDTGTELVAYVEAFTGSSNDTEIKQCIYLTELMMRNIELPALRTNPYTTTGVADSNGYVPIPADMNRPILFFNQGGGNGPWLVYDRIGDRDMIAEQMIENLYLNPVNIPQVFRGKFSEVGQQYEFLPGLGQGAVINMYYFTTWPFLFTTDSNNQPVDTNVVLQSFPEGYVYGTLHNYYLKRKMADDANGWLAKFNLAWDTVEDQNNKGKWSGGHTKLTSIFQPRQQSRYSTR*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold JGI24219J26650_1001588

Overview

Ecosystem & Geography

Associated Families

Sequences