NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24219J26650_1002217

Scaffold JGI24219J26650_1002217


Overview

Basic Information
Taxon OID3300002098 Open in IMG/M
Scaffold IDJGI24219J26650_1002217 Open in IMG/M
Source Dataset NameLentic bog actinobacteria communities from Grosse Fuchskuhle, Germany - Sample acI-B2 co-culture F-B7 metagenome
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5159
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (68.75%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Lentic → Lentic Enriched Actinobacterial Communities From Dystrophic Bog Grosse Fuchskuhle, Brandenburg, Germany

Source Dataset Sampling Location
Location NameBrandenburg, Germany
CoordinatesLat. (o)53.152741Long. (o)13.022518Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F050979Metagenome144Y
F051928Metagenome143Y
F054678Metagenome139N

Sequences

Protein IDFamilyRBSSequence
JGI24219J26650_100221711F051928GAGMTKNYQVRKQWRVKLHAKRCNDQDQSPARYQRDARVLNRAMAIYKIKGTSASWQS*
JGI24219J26650_100221712F054678AGGAMAELKKTIIVENVLVKGYIKHPSGKKTMFEFNKQDFKPSAFEKIFEEVGRKF*
JGI24219J26650_10022172F050979AGGAMAAPQVHKSKRHADPFKTKTGKDRLKAFSIKQLYLLLEKLTEGGKKRSKIAKEIARRTPV
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