NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24808J26613_1004862

Scaffold JGI24808J26613_1004862


Overview

Basic Information
Taxon OID3300002099 Open in IMG/M
Scaffold IDJGI24808J26613_1004862 Open in IMG/M
Source Dataset NameSoil microbial communities from Manhattan, Kansas, USA - Sample 400um MDA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3553
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Kansas (Konza Prairie Natural Area And Manhattan, Kansas, Usa)

Source Dataset Sampling Location
Location NameManhattan, Kansas, USA
CoordinatesLat. (o)39.214Long. (o)-96.5852Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022905Metagenome / Metatranscriptome212N
F057493Metagenome / Metatranscriptome136N
F081935Metagenome / Metatranscriptome114N

Sequences

Protein IDFamilyRBSSequence
JGI24808J26613_10048623F057493GAGGLRDSKRDKVYECLNCGHQHSETEAEVGSILYCKDCDKYEQIVHISETGISTSKRLEKDEQFQLLSEGRLKIVDNNDIRN*
JGI24808J26613_10048624F081935GAGMRIERLPAPIXDEQRQVKIGSYMNDTSAFWYIRKETNSXRXRTCIICGKTASYLVYFQIDGAKLKEKYCEQCLDSWVYLDLDESGIPNISK*
JGI24808J26613_10048626F022905N/AVVSLVSCPTLANAEIKVTPPLNWQPSPNNNSTSMIWYQNSTKSVFGINKAPDILSFPLFLAGPFVAQFLTDKGVLESADQISFGHSNYGYRYILNLSSPSKLLNSFSGLPQIGSFLTTIPQGYDVPYKGMLILTQKQGDLYAIIFLSPIEXFDSVLRDIKASMDSIQFNSIE*
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