Basic Information | |
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Taxon OID | 3300002128 Open in IMG/M |
Scaffold ID | JGI24036J26619_10078529 Open in IMG/M |
Source Dataset Name | Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 661 |
Total Scaffold Genes | 1 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 1 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Kellogg Biological Station, Michigan, USA | |||||||
Coordinates | Lat. (o) | 42.3948 | Long. (o) | -85.3738 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F052428 | Metagenome / Metatranscriptome | 142 | Y |
Protein ID | Family | RBS | Sequence |
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JGI24036J26619_100785291 | F052428 | N/A | TSLRGFVVVVAPLLSSVSVMGCATPRMAPPADIASASEVLAVSDRSRASGSFVNEGFKLGNYEVVDVDRKWNSTSGSGVGPWSKETKTTGFSYALAAGGKKLPGKCSSVTKSQGFGGFSWGSVRIACTCDGEAGKAELVMTDGGRTMKVGDKDYKLEPINAVEGGGTQSNPTGFRADGDAPLGAVDVGNPGQVWLKKGLDDGTRSTTTCAFVGLMLYKAP |
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