NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold M2t2BS1_1091295

Scaffold M2t2BS1_1091295


Overview

Basic Information
Taxon OID3300002131 Open in IMG/M
Scaffold IDM2t2BS1_1091295 Open in IMG/M
Source Dataset NameMarine microbial communities from the Baltic Sea, analyzing arctic terrigenous carbon compounds - M2t2BS1 (111f)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1315
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Unclassified → Unclassified → Unclassified → Marine → Marine Microbial Communities From The Baltic Sea, Analyzing Arctic Terrigenous Carbon Compounds

Source Dataset Sampling Location
Location NameBaltic Sea
CoordinatesLat. (o)57.305Long. (o)20.0745Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000751Metagenome / Metatranscriptome907Y
F028180Metagenome / Metatranscriptome192N

Sequences

Protein IDFamilyRBSSequence
M2t2BS1_10912952F028180N/AMKNLFITLCLVLTSLTLTAQEAFNGIWKTEGSNYLKTILASDYAVLQCFNTSFNEYNVITETIVFENKNKFTSELYNPDNGYRVTIEYTLINKDSISSKYTGDITGVYGIKRLY*
M2t2BS1_10912953F000751N/AMNIYKTNFPTEQEGKDYLSSIGVLVEADDQIVFSKNTAAVVYIGKIVKIPATYDADGNIVTPAVYHDGFAIDVMNAKPDLDFGAFMVYPAEAAHSFYGYPRNAEVPPPIAPEDKARAIIEE*
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