NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold M2t2BS1_1122441

Scaffold M2t2BS1_1122441


Overview

Basic Information
Taxon OID3300002131 Open in IMG/M
Scaffold IDM2t2BS1_1122441 Open in IMG/M
Source Dataset NameMarine microbial communities from the Baltic Sea, analyzing arctic terrigenous carbon compounds - M2t2BS1 (111f)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1353
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: Euk_MAG)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Unclassified → Unclassified → Unclassified → Marine → Marine Microbial Communities From The Baltic Sea, Analyzing Arctic Terrigenous Carbon Compounds

Source Dataset Sampling Location
Location NameBaltic Sea
CoordinatesLat. (o)57.305Long. (o)20.0745Alt. (m)Depth (m)1
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018328Metagenome235Y

Sequences

Protein IDFamilyRBSSequence
M2t2BS1_11224412F018328N/ATQNAVSGSGTGAVGKQVELWVPAIQMLPDVEDDYARNHLRDVSYYDYYQYTLKNIEAGGTFNHLVSNAVSNLKACLIVPLSNTLNNNVNPFDDGLPQQLAHINNFNVVVGGVNTLHQDSRYTYQSFNNEFFNEFGINGNQSAGLGSSLIDFKSWSNKPYYYVNCSRVPLEQQMAYRSLQIKGTNLSAQTVDYLIYAIYEKNFQMDVVSGVIKPIK*

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.