NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold M2t2BS1_1190883

Scaffold M2t2BS1_1190883


Overview

Basic Information
Taxon OID3300002131 Open in IMG/M
Scaffold IDM2t2BS1_1190883 Open in IMG/M
Source Dataset NameMarine microbial communities from the Baltic Sea, analyzing arctic terrigenous carbon compounds - M2t2BS1 (111f)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12183
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)24 (92.31%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Unclassified → Unclassified → Unclassified → Marine → Marine Microbial Communities From The Baltic Sea, Analyzing Arctic Terrigenous Carbon Compounds

Source Dataset Sampling Location
Location NameBaltic Sea
CoordinatesLat. (o)57.305Long. (o)20.0745Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025174Metagenome / Metatranscriptome203N
F033361Metagenome / Metatranscriptome177Y
F100708Metagenome / Metatranscriptome102Y
F102852Metagenome101N

Sequences

Protein IDFamilyRBSSequence
M2t2BS1_119088312F102852AGGAGMRNKIENIFGFDASLNREMEVDNYSPRMATELVALQKRIKKSHPFAKFRHTADDALAIRLSPQSMCFDAKVSWDTDAYIVMTVSTCRERDHSYDDTKKYNIAYSDRSFTSITKTLARATKLIKDTKSATGERVLEKVMQGTIDPFGRGLKQAQEKLDTLQRDVFSSMRNSLTSDALLEYSLAALYPSRPVRADIRHQVEDCTTQYLERKKDLGDSIAACDGLQTLSIYKLKNIDKVFFHYRDTTAGEMQRIKHVDDVNKLPQEVLAKLSVLQATGIDAMDTVGYSYDVKVLTSIGCVRRDAHDYDFVEDAMCVYISPETMAEVEALVGY*
M2t2BS1_119088320F033361AGGAGMLIKCNAIDHAYLIEDDPVRPKLFKDNSVRFEDPFHVYAEVNDETGEIAAVVCTIVCKFVPQDEYQIKLIAMGKTERIEEQLKEREELHGELGTVLCPYSVWSYQRGHGRKLINNLLEAAPIMHPNVDAVITMSPHTDTAMRFHIHNGADIFSTSGECVNYEYEVPDVILH*
M2t2BS1_119088321F025174GAGGMSYFTDPMAALEEAEYVAKEEKRTMCVVEVEPNMIVVVPKKVAAELGGIILETCVPFEENHNIYD*
M2t2BS1_119088325F100708AGGVTTTRVDKPTGEERDRLREELAQQIKEYLAKGGKVTQCPDRTFTQTEGPRRKFDGGRNDSLTDPTNRDIGAMRPTKNKGGSE*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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