NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold M2t2BS1_1305888

Scaffold M2t2BS1_1305888


Overview

Basic Information
Taxon OID3300002131 Open in IMG/M
Scaffold IDM2t2BS1_1305888 Open in IMG/M
Source Dataset NameMarine microbial communities from the Baltic Sea, analyzing arctic terrigenous carbon compounds - M2t2BS1 (111f)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4090
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (81.82%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Unclassified → Unclassified → Unclassified → Marine → Marine Microbial Communities From The Baltic Sea, Analyzing Arctic Terrigenous Carbon Compounds

Source Dataset Sampling Location
Location NameBaltic Sea
CoordinatesLat. (o)57.305Long. (o)20.0745Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002502Metagenome / Metatranscriptome553Y
F029774Metagenome / Metatranscriptome187Y
F062573Metagenome / Metatranscriptome130Y

Sequences

Protein IDFamilyRBSSequence
M2t2BS1_13058885F002502AGGAMESTITVGSQFTTQKSGVSGTVQEIVKNANGTSRIRLSLANGDSRWTTVK*
M2t2BS1_13058886F029774GAGMARSISVKVPTSLLIQQIEERIAQIDKDIEEYPAKRAAYDKASEAYTKEVAEFMADFVVKNHKKIRTGYDADLLRLQSYGNRVDLTFYTDAIPNFPKRPEAPESPNQKESFGREYVSRKSLLEKNLRILKMTSQEEVNASTYGAIMEII*
M2t2BS1_13058889F062573GGAMSGDLKEFEVIESKAYIVHAYDEEQALSRFGNYRHISESDYWSTVRELGTVPADDDHVTYS*
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