NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold M2t6BS2_1228870

Scaffold M2t6BS2_1228870


Overview

Basic Information
Taxon OID3300002132 Open in IMG/M
Scaffold IDM2t6BS2_1228870 Open in IMG/M
Source Dataset NameMarine microbial communities from the Baltic Sea, analyzing arctic terrigenous carbon compounds - M2t6BS2 (105f)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)46739
Total Scaffold Genes72 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)70 (97.22%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Unclassified → Unclassified → Unclassified → Marine → Marine Microbial Communities From The Baltic Sea, Analyzing Arctic Terrigenous Carbon Compounds

Source Dataset Sampling Location
Location NameBaltic Sea
CoordinatesLat. (o)57.305Long. (o)20.0745Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000375Metagenome / Metatranscriptome1217Y
F002322Metagenome / Metatranscriptome571Y

Sequences

Protein IDFamilyRBSSequence
M2t6BS2_122887037F000375AGGAGMTKLHDLEEKIMDCWSICNDLETVFQQIGDGEREPTTNELMNALMGMQQLYQWKFEQLFSSYGDVIGGHNA*
M2t6BS2_122887058F002322GAGMLDKLPYSKLVEKHILECIQGGVGIRQMIASMQHLQSAPKSLSTMYKIYGTFIESERAKINGMVGKKVIDQAMEGDFKSQEFFLRSRGGWSPTQTVVEVEQDVDPDSDESAVSSLMALLGFDNEPDTQEDNPK*
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