NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold M2t6FKB1_1312189

Scaffold M2t6FKB1_1312189


Overview

Basic Information
Taxon OID3300002136 Open in IMG/M
Scaffold IDM2t6FKB1_1312189 Open in IMG/M
Source Dataset NameM2t6FKB1 (104f)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)565
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Unclassified → Unclassified → Unclassified → Marine → Marine Microbial Communities From The Baltic Sea, Analyzing Arctic Terrigenous Carbon Compounds

Source Dataset Sampling Location
Location NameBaltic Sea
CoordinatesLat. (o)57.305Long. (o)20.0745Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011096Metagenome / Metatranscriptome295Y
F055736Metagenome / Metatranscriptome138Y

Sequences

Protein IDFamilyRBSSequence
M2t6FKB1_13121891F011096N/AEWDQVIQAAKMYVNEYRDAEYMYMQTSQYFICKQDKHKVKSSTLADYCDMIRDGIDTEQQTFKEKVV*
M2t6FKB1_13121893F055736N/AMSKPTEAWVGQYAAFNEALKYMRGRQNGTEKSIYTPWPKFNDAATDGLEWNTLTVIGGRPGSGKTLIKDQ

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