NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold M3t6FKB1_1123967

Scaffold M3t6FKB1_1123967


Overview

Basic Information
Taxon OID3300002138 Open in IMG/M
Scaffold IDM3t6FKB1_1123967 Open in IMG/M
Source Dataset NameM3t6FKB1 (102f)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7171
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (45.45%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Unclassified → Unclassified → Unclassified → Marine → Marine Microbial Communities From The Baltic Sea, Analyzing Arctic Terrigenous Carbon Compounds

Source Dataset Sampling Location
Location NameBaltic Sea
CoordinatesLat. (o)65.3915Long. (o)23.49916667Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017466Metagenome / Metatranscriptome240Y
F021290Metagenome / Metatranscriptome219Y

Sequences

Protein IDFamilyRBSSequence
M3t6FKB1_11239675F021290N/AMRASEFITEGKRPGRRALAKHEFETAHPGLVGPHANDDTYWGRYYDFYRVATLAGMDLADLEKTDDISFFGNLPLFSAYTEHDRKKLIAIMKKLGMKPDTLISNGSHETNGVNNVSPVKSFRGYAR*
M3t6FKB1_11239677F017466N/AMRATEFITETKYGAAVDIPANSKKLPNSQASAIKGAISMPDLSQNKQGGSPYTQWRFSIAMAGAPEFPTDAAGIFAGDPLLACYTEEELEIINYAARQVGAGEVRKLTDNRSTEADWVYKESPVKGFKGYPR*
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